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Imaging PAM

[example here] [github hepo here]

A collection of functions and scripts to import and process chlorophyll fluorescence images, written in Matlab. These data were collected using an M-series Imaging PAM fitted with an IMAG-MIN/B measuring head (Walz GmbH, Effeltrich, Germany). Parameters calculated with the Matlab functions are from formalae described in the Imaging PAM manual. Data were first exported as a TIFF stack from the PIM format using Walz ImagingWin software (tested with ImagingWin v2.46i).

Processing fixed-mount thermal imagery

[example here] [github repo here]

This is a demonstration script written in R-markdown for importing, correcting and analysing thermal images of a forest canopy. Data were collected using a FLIR A325sc thermal camera when I was an instructor for PhysFestII at Holden Arboretum in July 2018 [PhysfestII Link]. This script uses the ‘Thermimage’ R package.

sapfluxR

coming soon

An R package for importing and processing Heat Ratio Method (HRM) sapflow data.